Molecular re-identification of Stemphylium lycopersici and Stemphylium solani isolates deposited in NCBI GenBank and morphological characteristics of Malaysian isolates

Abbas Nasehi; Abdullah M. Al-Sadi; Mehdi Nasr Esfahani; Talieh Ostovar; Mehdi Rezaie; Omid Atghia; Wael Alsultan; Mohammad Javan-Nikkhah

doi:10.1007/s10658-018-1602-9

Molecular re-identification of Stemphylium lycopersici and Stemphylium solani isolates deposited in NCBI GenBank and morphological characteristics of Malaysian isolates

Abbas Nasehi^*, Abdullah M. Al-Sadi, Mehdi Nasr Esfahani, Talieh Ostovar, Mehdi Rezaie, Omid Atghia, Wael Alsultan, Mohammad Javan-Nikkhah

^*Corresponding author for this work

Crop Sciences

Research output: Contribution to journal › Article › peer-review

15 Citations (Scopus)

Abstract

Some Stemphylium isolates reported from Malaysia as well as other regions of the world have been identified by morphology and blast analysis of the ITS region only, and eventually deposited in NCBI GenBank. To our knowledge, some of these isolates have been misidentified. The re-examination of identity of all Stemphylium isolates reported from Malaysia using morphological and phylogenetic analyses of the ITS and gpd, as well as phylogenetic analyses of all isolates of S. lycopersici and S. solani available in NCBI GenBank from other regions of the world indicated that a remarkable number of isolates deposited in NCBI GenBank under S. lycopersici and S. solani species were misidentified.

Original language	English
Pages (from-to)	965-974
Number of pages	10
Journal	European Journal of Plant Pathology
Volume	153
Issue number	3
DOIs	https://doi.org/10.1007/s10658-018-1602-9
Publication status	Published - Mar 15 2019

Keywords

ITS
Misidentification
NCBI GenBank
Phylogeny
gpd

ASJC Scopus subject areas

Agronomy and Crop Science
Plant Science
Horticulture

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10.1007/s10658-018-1602-9

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Nasehi, A., Al-Sadi, A. M., Nasr Esfahani, M., Ostovar, T., Rezaie, M., Atghia, O., Alsultan, W., & Javan-Nikkhah, M. (2019). Molecular re-identification of Stemphylium lycopersici and Stemphylium solani isolates deposited in NCBI GenBank and morphological characteristics of Malaysian isolates. European Journal of Plant Pathology, 153(3), 965-974. https://doi.org/10.1007/s10658-018-1602-9

Molecular re-identification of Stemphylium lycopersici and Stemphylium solani isolates deposited in NCBI GenBank and morphological characteristics of Malaysian isolates. / Nasehi, Abbas; Al-Sadi, Abdullah M.; Nasr Esfahani, Mehdi et al.
In: European Journal of Plant Pathology, Vol. 153, No. 3, 15.03.2019, p. 965-974.

Research output: Contribution to journal › Article › peer-review

Nasehi, A, Al-Sadi, AM, Nasr Esfahani, M, Ostovar, T, Rezaie, M, Atghia, O, Alsultan, W & Javan-Nikkhah, M 2019, 'Molecular re-identification of Stemphylium lycopersici and Stemphylium solani isolates deposited in NCBI GenBank and morphological characteristics of Malaysian isolates', European Journal of Plant Pathology, vol. 153, no. 3, pp. 965-974. https://doi.org/10.1007/s10658-018-1602-9

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AU - Nasr Esfahani, Mehdi

AU - Ostovar, Talieh

AU - Rezaie, Mehdi

AU - Atghia, Omid

AU - Alsultan, Wael

AU - Javan-Nikkhah, Mohammad

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AB - Some Stemphylium isolates reported from Malaysia as well as other regions of the world have been identified by morphology and blast analysis of the ITS region only, and eventually deposited in NCBI GenBank. To our knowledge, some of these isolates have been misidentified. The re-examination of identity of all Stemphylium isolates reported from Malaysia using morphological and phylogenetic analyses of the ITS and gpd, as well as phylogenetic analyses of all isolates of S. lycopersici and S. solani available in NCBI GenBank from other regions of the world indicated that a remarkable number of isolates deposited in NCBI GenBank under S. lycopersici and S. solani species were misidentified.

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Molecular re-identification of Stemphylium lycopersici and Stemphylium solani isolates deposited in NCBI GenBank and morphological characteristics of Malaysian isolates

Abstract

Keywords

ASJC Scopus subject areas

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