Molecular re-identification of Stemphylium lycopersici and Stemphylium solani isolates deposited in NCBI GenBank and morphological characteristics of Malaysian isolates

Abbas Nasehi; Abdullah Al-Sadi; Mehdi Nasr Esfahani; Talieh Ostovar; Mehdi Rezaie; Omid Atghia; Wael Alsultan; Mohammad Javan-Nikkhah

doi:10.1007/s10658-018-1602-9

Molecular re-identification of Stemphylium lycopersici and Stemphylium solani isolates deposited in NCBI GenBank and morphological characteristics of Malaysian isolates

Abbas Nasehi^*, Abdullah Al-Sadi, Mehdi Nasr Esfahani, Talieh Ostovar, Mehdi Rezaie, Omid Atghia, Wael Alsultan, Mohammad Javan-Nikkhah

^*Corresponding author for this work

Crop Sciences

Research output: Contribution to journal › Article › peer-review

11 Citations (SciVal)

Abstract

Some Stemphylium isolates reported from Malaysia as well as other regions of the world have been identified by morphology and blast analysis of the ITS region only, and eventually deposited in NCBI GenBank. To our knowledge, some of these isolates have been misidentified. The re-examination of identity of all Stemphylium isolates reported from Malaysia using morphological and phylogenetic analyses of the ITS and gpd, as well as phylogenetic analyses of all isolates of S. lycopersici and S. solani available in NCBI GenBank from other regions of the world indicated that a remarkable number of isolates deposited in NCBI GenBank under S. lycopersici and S. solani species were misidentified.

Original language	English
Journal	European Journal of Plant Pathology
DOIs	https://doi.org/10.1007/s10658-018-1602-9
Publication status	Accepted/In press - Jan 1 2018

Keywords

gpd
ITS
Misidentification
NCBI GenBank
Phylogeny

ASJC Scopus subject areas

Agronomy and Crop Science
Plant Science
Horticulture

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10.1007/s10658-018-1602-9

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Nasehi, A., Al-Sadi, A., Nasr Esfahani, M., Ostovar, T., Rezaie, M., Atghia, O., Alsultan, W., & Javan-Nikkhah, M. (Accepted/In press). Molecular re-identification of Stemphylium lycopersici and Stemphylium solani isolates deposited in NCBI GenBank and morphological characteristics of Malaysian isolates. European Journal of Plant Pathology. https://doi.org/10.1007/s10658-018-1602-9

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abstract = "Some Stemphylium isolates reported from Malaysia as well as other regions of the world have been identified by morphology and blast analysis of the ITS region only, and eventually deposited in NCBI GenBank. To our knowledge, some of these isolates have been misidentified. The re-examination of identity of all Stemphylium isolates reported from Malaysia using morphological and phylogenetic analyses of the ITS and gpd, as well as phylogenetic analyses of all isolates of S. lycopersici and S. solani available in NCBI GenBank from other regions of the world indicated that a remarkable number of isolates deposited in NCBI GenBank under S. lycopersici and S. solani species were misidentified.",

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AU - Nasehi, Abbas

AU - Al-Sadi, Abdullah

AU - Nasr Esfahani, Mehdi

AU - Ostovar, Talieh

AU - Rezaie, Mehdi

AU - Atghia, Omid

AU - Alsultan, Wael

AU - Javan-Nikkhah, Mohammad

PY - 2018/1/1

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N2 - Some Stemphylium isolates reported from Malaysia as well as other regions of the world have been identified by morphology and blast analysis of the ITS region only, and eventually deposited in NCBI GenBank. To our knowledge, some of these isolates have been misidentified. The re-examination of identity of all Stemphylium isolates reported from Malaysia using morphological and phylogenetic analyses of the ITS and gpd, as well as phylogenetic analyses of all isolates of S. lycopersici and S. solani available in NCBI GenBank from other regions of the world indicated that a remarkable number of isolates deposited in NCBI GenBank under S. lycopersici and S. solani species were misidentified.

AB - Some Stemphylium isolates reported from Malaysia as well as other regions of the world have been identified by morphology and blast analysis of the ITS region only, and eventually deposited in NCBI GenBank. To our knowledge, some of these isolates have been misidentified. The re-examination of identity of all Stemphylium isolates reported from Malaysia using morphological and phylogenetic analyses of the ITS and gpd, as well as phylogenetic analyses of all isolates of S. lycopersici and S. solani available in NCBI GenBank from other regions of the world indicated that a remarkable number of isolates deposited in NCBI GenBank under S. lycopersici and S. solani species were misidentified.

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KW - ITS

KW - Misidentification

KW - NCBI GenBank

KW - Phylogeny

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JF - European Journal of Plant Pathology

ER -

Molecular re-identification of Stemphylium lycopersici and Stemphylium solani isolates deposited in NCBI GenBank and morphological characteristics of Malaysian isolates

Abstract

Keywords

ASJC Scopus subject areas

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