Use of an internal standard in a closed one-tube RT-PCR for the detection of equine arteritis virus RNA with fluorescent probes

David G. Westcott, Donald P. King, Trevor W. Drew, Norbert Nowotny, Johanna Kindermann, Duncan Hannant, Sándor Belák, David J. Paton

Research output: Contribution to journalArticle

23 Citations (Scopus)

Abstract

Routine detection of equine arteritis virus (EAV) can be achieved by virus isolation (VI) in cell culture, or by the amplification of viral genome by molecular methods. To simplify molecular diagnosis, a number of different Reverse Transcriptase Polymerase Chain Reaction (RT-PCR) and RT-nested PCR (RT-nPCR) assays were compared, and a one-tube method was developed and optimised utilizing a fluorogenic probe (TaqMan®). An artificial RNA template (Mimic) and associated probe were also constructed to provide in-tube validation of the RT-PCR system. To assess the utility of the RT-PCR TaqMan® assay, 28 different isolates of EAV representing different genetic groups of American and European strains were tested. Furthermore, the ability of VI and RT-PCR TaqMan® assay to detect EAV in different biological matrices such as semen, nasal and faecal swabs and blood was compared. All 28 EAV strains were detected by the RT-PCR TaqMan® assay. The results of TaqMan® and VI testing were in agreement for 30 of the 33 semen samples and all of the 50 other clinical specimens examined: the RT-PCR TaqMan® assay detected 18 positive semen samples, three more than VI. In conclusion, the one-tube RT-PCR TaqMan® assay is a rapid, reliable method for the detection of EAV.

Original languageEnglish
Pages (from-to)165-176
Number of pages12
JournalVeterinary Research
Volume34
Issue number2
Publication statusPublished - Mar 2003

Fingerprint

Equine Arteritis Virus
Equine arteritis virus
Reverse Transcriptase Polymerase Chain Reaction
Fluorescent Dyes
reverse transcriptase polymerase chain reaction
RNA
Semen
assays
Viruses
semen
viruses
Viral Genome
Nose
rapid methods
Cell Culture Techniques
cell culture
Polymerase Chain Reaction

Keywords

  • Equine arteritis virus
  • Fluorescent probe
  • Mimic
  • RT-PCR
  • TaqMan®

ASJC Scopus subject areas

  • veterinary(all)

Cite this

Westcott, D. G., King, D. P., Drew, T. W., Nowotny, N., Kindermann, J., Hannant, D., ... Paton, D. J. (2003). Use of an internal standard in a closed one-tube RT-PCR for the detection of equine arteritis virus RNA with fluorescent probes. Veterinary Research, 34(2), 165-176.

Use of an internal standard in a closed one-tube RT-PCR for the detection of equine arteritis virus RNA with fluorescent probes. / Westcott, David G.; King, Donald P.; Drew, Trevor W.; Nowotny, Norbert; Kindermann, Johanna; Hannant, Duncan; Belák, Sándor; Paton, David J.

In: Veterinary Research, Vol. 34, No. 2, 03.2003, p. 165-176.

Research output: Contribution to journalArticle

Westcott, DG, King, DP, Drew, TW, Nowotny, N, Kindermann, J, Hannant, D, Belák, S & Paton, DJ 2003, 'Use of an internal standard in a closed one-tube RT-PCR for the detection of equine arteritis virus RNA with fluorescent probes', Veterinary Research, vol. 34, no. 2, pp. 165-176.
Westcott, David G. ; King, Donald P. ; Drew, Trevor W. ; Nowotny, Norbert ; Kindermann, Johanna ; Hannant, Duncan ; Belák, Sándor ; Paton, David J. / Use of an internal standard in a closed one-tube RT-PCR for the detection of equine arteritis virus RNA with fluorescent probes. In: Veterinary Research. 2003 ; Vol. 34, No. 2. pp. 165-176.
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