N,N-Dimethyl-5-methoxymethyl-2′-deoxycytidine

Gerald F. Audette; Wajdi M. Zoghaib; Sagar V. Gupta; J. Wilson Quail; Louis T.J. Delbaere

doi:10.1107/S0108270198013249

N,N-Dimethyl-5-methoxymethyl-2′-deoxycytidine

Gerald F. Audette^*, Wajdi M. Zoghaib, Sagar V. Gupta, J. Wilson Quail, Louis T.J. Delbaere

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

Abstract

In the title compound, C₁₃H₂₁N₃O₅, the pyrimidine ring adopts the antiperiplanar (-ap) conformation [ χ = 193.54 (19)°]. The deoxyribose sugar ring has the C2′-exo-C3′-endo (₂T³) twist conformation. The pseudo-rotational parameters of the deoxyribose sugar ring are P = 6.83 (2)° and τ_m = 38.27 (2)°. The exocyclic side chain at C5′ has the g⁺ conformation [γ = 47.7 (3)°]. The 5-methoxymethyl group is distal to the deoxyribose sugar ring, with a C6-C5-C52-O52 torsion angle of -91.9 (3)°.

Original language	English
Pages (from-to)	427-430
Number of pages	4
Journal	Acta Crystallographica Section C: Crystal Structure Communications
Volume	55
Issue number	3
DOIs	https://doi.org/10.1107/S0108270198013249
Publication status	Published - Mar 15 1999
Externally published	Yes

ASJC Scopus subject areas

Biochemistry, Genetics and Molecular Biology(all)

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10.1107/S0108270198013249

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@article{aef7bfd9c57848938170ac8a966e9a88,

title = "N,N-Dimethyl-5-methoxymethyl-2′-deoxycytidine",

abstract = "In the title compound, C13H21N3O5, the pyrimidine ring adopts the antiperiplanar (-ap) conformation [ χ = 193.54 (19)°]. The deoxyribose sugar ring has the C2′-exo-C3′-endo (2T3) twist conformation. The pseudo-rotational parameters of the deoxyribose sugar ring are P = 6.83 (2)° and τm = 38.27 (2)°. The exocyclic side chain at C5′ has the g+ conformation [γ = 47.7 (3)°]. The 5-methoxymethyl group is distal to the deoxyribose sugar ring, with a C6-C5-C52-O52 torsion angle of -91.9 (3)°.",

author = "Audette, {Gerald F.} and Zoghaib, {Wajdi M.} and Gupta, {Sagar V.} and Quail, {J. Wilson} and Delbaere, {Louis T.J.}",

year = "1999",

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doi = "10.1107/S0108270198013249",

language = "English",

volume = "55",

pages = "427--430",

journal = "Acta Crystallographica Section C: Crystal Structure Communications",

issn = "0108-2701",

publisher = "International Union of Crystallography",

number = "3",

}

TY - JOUR

T1 - N,N-Dimethyl-5-methoxymethyl-2′-deoxycytidine

AU - Audette, Gerald F.

AU - Zoghaib, Wajdi M.

AU - Gupta, Sagar V.

AU - Quail, J. Wilson

AU - Delbaere, Louis T.J.

PY - 1999/3/15

Y1 - 1999/3/15

N2 - In the title compound, C13H21N3O5, the pyrimidine ring adopts the antiperiplanar (-ap) conformation [ χ = 193.54 (19)°]. The deoxyribose sugar ring has the C2′-exo-C3′-endo (2T3) twist conformation. The pseudo-rotational parameters of the deoxyribose sugar ring are P = 6.83 (2)° and τm = 38.27 (2)°. The exocyclic side chain at C5′ has the g+ conformation [γ = 47.7 (3)°]. The 5-methoxymethyl group is distal to the deoxyribose sugar ring, with a C6-C5-C52-O52 torsion angle of -91.9 (3)°.

AB - In the title compound, C13H21N3O5, the pyrimidine ring adopts the antiperiplanar (-ap) conformation [ χ = 193.54 (19)°]. The deoxyribose sugar ring has the C2′-exo-C3′-endo (2T3) twist conformation. The pseudo-rotational parameters of the deoxyribose sugar ring are P = 6.83 (2)° and τm = 38.27 (2)°. The exocyclic side chain at C5′ has the g+ conformation [γ = 47.7 (3)°]. The 5-methoxymethyl group is distal to the deoxyribose sugar ring, with a C6-C5-C52-O52 torsion angle of -91.9 (3)°.

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JF - Acta Crystallographica Section C: Crystal Structure Communications

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ER -

N,N-Dimethyl-5-methoxymethyl-2′-deoxycytidine

Abstract

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