N,N-dimethyl-5-methoxymethyl-2'-deoxycytidine.

G. F. Audette, W. M. Zoghaib, S. V. Gupta, J. W. Quail, L. T. Delbaere

Research output: Contribution to journalArticle

Abstract

In the title compound, C13H21N3O5, the pyrimidine ring adopts the antiperiplanar (-ap) conformation [chi = 193.54 (19) degrees]. The deoxyribose sugar ring has the C2'-exo-C3'-endo (2T3) twist conformation. The pseudo-rotational parameters of the deoxyribose sugar ring are P = 6.83 (2) degrees and Tm = 38.27 (2) degrees. The exocyclic side chain at C5' has the g+ conformation [gamma = 47.7 (3) degrees]. The 5-methoxymethyl group is distal to the deoxyribose sugar ring, with a C6-C5-C52-O52 torsion angle of -91.9 (3) degrees.

Original languageEnglish
JournalActa Crystallographica Section C: Crystal Structure Communications
Volume55
Publication statusPublished - Mar 15 1999

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Deoxyribose
Sugars
Conformations
sugars
rings
Torsional stress
pyrimidines
torsion
N,N-dimethyl-5-methoxymethyl-2'-deoxycytidine

ASJC Scopus subject areas

  • Condensed Matter Physics
  • Structural Biology

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N,N-dimethyl-5-methoxymethyl-2'-deoxycytidine. / Audette, G. F.; Zoghaib, W. M.; Gupta, S. V.; Quail, J. W.; Delbaere, L. T.

In: Acta Crystallographica Section C: Crystal Structure Communications, Vol. 55, 15.03.1999.

Research output: Contribution to journalArticle

Audette, G. F. ; Zoghaib, W. M. ; Gupta, S. V. ; Quail, J. W. ; Delbaere, L. T. / N,N-dimethyl-5-methoxymethyl-2'-deoxycytidine. In: Acta Crystallographica Section C: Crystal Structure Communications. 1999 ; Vol. 55.
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abstract = "In the title compound, C13H21N3O5, the pyrimidine ring adopts the antiperiplanar (-ap) conformation [chi = 193.54 (19) degrees]. The deoxyribose sugar ring has the C2'-exo-C3'-endo (2T3) twist conformation. The pseudo-rotational parameters of the deoxyribose sugar ring are P = 6.83 (2) degrees and Tm = 38.27 (2) degrees. The exocyclic side chain at C5' has the g+ conformation [gamma = 47.7 (3) degrees]. The 5-methoxymethyl group is distal to the deoxyribose sugar ring, with a C6-C5-C52-O52 torsion angle of -91.9 (3) degrees.",
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AU - Quail, J. W.

AU - Delbaere, L. T.

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AB - In the title compound, C13H21N3O5, the pyrimidine ring adopts the antiperiplanar (-ap) conformation [chi = 193.54 (19) degrees]. The deoxyribose sugar ring has the C2'-exo-C3'-endo (2T3) twist conformation. The pseudo-rotational parameters of the deoxyribose sugar ring are P = 6.83 (2) degrees and Tm = 38.27 (2) degrees. The exocyclic side chain at C5' has the g+ conformation [gamma = 47.7 (3) degrees]. The 5-methoxymethyl group is distal to the deoxyribose sugar ring, with a C6-C5-C52-O52 torsion angle of -91.9 (3) degrees.

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