Molecular mapping of the crown rust resistance gene Rpc1 in barley

H. A. Agrama, L. Dahleen, M. Wentz, Y. Jin, B. Steffenson

Research output: Contribution to journalArticle

4 Citations (Scopus)

Abstract

Crown rust of barley, caused by Puccinia coronata var. hordei, occurs sporadically and sometimes may cause yield and quality reductions in the Great Plains region of the United States and Canada. The incompletely dominant resistance allele Rpc1 confers resistance to P. coronata in barley. Two generations. F 2 and F 2:3, developed from a cross between the resistant line Hor2596 (CIho 1243) and the susceptible line Bowman (PI 483237), were used in this study. Bulked segregant analysis combined with random amplified polymorphic DNA (RAPD) primers were used to identify molecular markers linked to Rpc1. DNA.genotypes produced by 500 RAPD primers, 200 microsatellites (SSRs), and 71 restriction fragment length polymorphism (RFLP) probes were applied to map Rpc1. Of these, 15 RAPD primers identified polymorphisms between resistant and susceptible bulks, and 62 SSR markers and 32 RFLP markers identified polymorphisms between the resistant and susceptible parents. The polymorphic markers were applied to 97 F 2 individuals and F 2:3 families. These markers identified 112 polymorphisms and were used for primary linkage mapping to Rpc1 using Map Manager QT. Two RFLP and five SSR markers spanning the centromere on chromosome 3H and one RAPD marker (OPO08-700) were linked with Rpc1 and, thus, used to construct a 30-centimorgan (cM) linkage map containing the Rpc1 locus. The genetic distance between Rpc1 and the closest marker, RAPD OPO08-700, was 2.5 cM. The linked markers will be useful for incorporating this crown rust resistance gene into barley breeding lines.

Original languageEnglish
Pages (from-to)858-861
Number of pages4
JournalPhytopathology
Volume94
Issue number8
Publication statusPublished - Aug 2004

Fingerprint

crown rust
random amplified polymorphic DNA technique
chromosome mapping
barley
DNA primers
Puccinia coronata
restriction fragment length polymorphism
genetic polymorphism
genes
Great Plains region
genetic markers
centromeres
breeding lines
genetic distance
managers
Canada
microsatellite repeats
alleles
chromosomes
loci

ASJC Scopus subject areas

  • Plant Science

Cite this

Agrama, H. A., Dahleen, L., Wentz, M., Jin, Y., & Steffenson, B. (2004). Molecular mapping of the crown rust resistance gene Rpc1 in barley. Phytopathology, 94(8), 858-861.

Molecular mapping of the crown rust resistance gene Rpc1 in barley. / Agrama, H. A.; Dahleen, L.; Wentz, M.; Jin, Y.; Steffenson, B.

In: Phytopathology, Vol. 94, No. 8, 08.2004, p. 858-861.

Research output: Contribution to journalArticle

Agrama, HA, Dahleen, L, Wentz, M, Jin, Y & Steffenson, B 2004, 'Molecular mapping of the crown rust resistance gene Rpc1 in barley', Phytopathology, vol. 94, no. 8, pp. 858-861.
Agrama HA, Dahleen L, Wentz M, Jin Y, Steffenson B. Molecular mapping of the crown rust resistance gene Rpc1 in barley. Phytopathology. 2004 Aug;94(8):858-861.
Agrama, H. A. ; Dahleen, L. ; Wentz, M. ; Jin, Y. ; Steffenson, B. / Molecular mapping of the crown rust resistance gene Rpc1 in barley. In: Phytopathology. 2004 ; Vol. 94, No. 8. pp. 858-861.
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