Isolation, characterization, and multiplexing of novel microsatellite markers for the tropical scalloped spiny lobster (Panulirus homarus)

M. Delghandi, S. Goddard, D. R. Jerry, H. T. Dao, H. Afzal, S. S. Al-Jardani

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

Of the various spiny lobster species in the tropical and subtropical Indo-West Pacific region, the tropical scalloped spiny lobster (Panulirus homarus) supports one of the most commercially valuable fishery resources in many coastal African and Asian countries. The last decade has witnessed a serious decline in the wild populations of this species. Knowledge of the genetic basis of spiny lobster population structure is a prerequisite to achieve a sustainable fisheries management for this species. Here, we describe 13 novel polymorphic microsatellite markers developed for P. homarus, using a cross-species primer design strategy based on P. ornatus Roche 454 shot-gun generated sequencing. Microsatellite polymorphisms were assessed in 96 unrelated P. homarus individuals of a natural population, with the number of alleles per locus varying from 2 to 14, the observed and expected heterozygosity from 0.00 to 0.78 and from 0.03 to 0.79, respectively, and with only four loci (Pho-G27, Pho-G32, Pho-G36, and Pho-G58) deviating from Hardy- Weinberg equilibrium. Genetic linkage disequilibrium analysis between all pairs of the loci showed significant departure from the null hypothesis between loci Pho-G22 - Pho-G30, and Pho-G30 - Pho-G35. The successful cross amplification of these microsatellites highlights the potential of the developed microsatellites for future population genetic research within the different Panulirus species.

Original languageEnglish
Pages (from-to)19066-19070
Number of pages5
JournalGenetics and Molecular Research
Volume14
Issue number4
DOIs
Publication statusPublished - Dec 29 2015

Fingerprint

Palinuridae
Nephropidae
Microsatellite Repeats
Fisheries
Population
Genetic Research
Genetic Linkage
Linkage Disequilibrium
Firearms
Population Genetics
Alleles

Keywords

  • 454 sequencing
  • Microsatellites
  • Multiplexing
  • Panulirus homarus
  • Population studies

ASJC Scopus subject areas

  • Genetics
  • Molecular Biology

Cite this

Isolation, characterization, and multiplexing of novel microsatellite markers for the tropical scalloped spiny lobster (Panulirus homarus). / Delghandi, M.; Goddard, S.; Jerry, D. R.; Dao, H. T.; Afzal, H.; Al-Jardani, S. S.

In: Genetics and Molecular Research, Vol. 14, No. 4, 29.12.2015, p. 19066-19070.

Research output: Contribution to journalArticle

Delghandi, M. ; Goddard, S. ; Jerry, D. R. ; Dao, H. T. ; Afzal, H. ; Al-Jardani, S. S. / Isolation, characterization, and multiplexing of novel microsatellite markers for the tropical scalloped spiny lobster (Panulirus homarus). In: Genetics and Molecular Research. 2015 ; Vol. 14, No. 4. pp. 19066-19070.
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