Genetic diversity, aggressiveness and metalaxyl sensitivity of Pythium spinosum infecting cucumber in Oman

A. M. Al-Sa'di, A. Drenth, M. L. Deadman, A. W A M De Cock, F. A. Al-Said, E. A B Aitken

Research output: Contribution to journalArticle

19 Citations (Scopus)

Abstract

A total of 24 isolates of Pythium spinosum from cucumber obtained from five regions in Oman were characterized for genetic diversity using amplified fragment length polymorphism (AFLP) fingerprinting and three isolates from the Netherlands, South Africa and Japan were included for comparison. Isolates from Oman were also characterized for aggressiveness on cucumber seedlings and sensitivity to metalaxyl. Identity of all isolates was confirmed using sequences of the internal transcribed spacer (ITS) region of the ribosomal DNA (rDNA), which showed more than 99% nucleotide similarity among all isolates. Using six primer-pair combinations, AFLP fingerprinting resolved 295 AFLP markers of which 193 were polymorphic among isolates from other countries and only six were polymorphic among isolates of P. spinosum from Oman. Seven different AFLP phenotypes of P. spinosum were recovered in Oman; two of them were found to contain over 79% of isolates and one was recovered from all regions in Oman. Phenotypes from Oman showed very high (≥99%) levels of genetic similarity to each other compared to moderate (mean =53%) levels of genetic similarity with phenotypes from other countries. In addition, all isolates from Oman were found to be highly sensitive to metalaxyl and all were aggressive on cucumber seedlings at 25°C. The high genetic similarity among phenotypes of P. spinosum in Oman as well as recovering two major clones across regions may suggest that P. spinosum has been recently introduced in Oman via a common source.

Original languageEnglish
Pages (from-to)29-35
Number of pages7
JournalJournal of Phytopathology
Volume156
Issue number1
DOIs
Publication statusPublished - Jan 2008

Fingerprint

Pythium spinosum
Pythium
Oman
Cucumis sativus
metalaxyl
cucumbers
aggression
genetic variation
amplified fragment length polymorphism
Phenotype
phenotype
Seedlings
Ribosomal Spacer DNA
seedlings
South Africa
Netherlands
ribosomal DNA
internal transcribed spacers
Japan

Keywords

  • AFLP fingerprinting
  • Damping-off
  • Oomycetes
  • Parsimony analysis
  • Phenotype

ASJC Scopus subject areas

  • Plant Science

Cite this

Genetic diversity, aggressiveness and metalaxyl sensitivity of Pythium spinosum infecting cucumber in Oman. / Al-Sa'di, A. M.; Drenth, A.; Deadman, M. L.; De Cock, A. W A M; Al-Said, F. A.; Aitken, E. A B.

In: Journal of Phytopathology, Vol. 156, No. 1, 01.2008, p. 29-35.

Research output: Contribution to journalArticle

Al-Sa'di, A. M. ; Drenth, A. ; Deadman, M. L. ; De Cock, A. W A M ; Al-Said, F. A. ; Aitken, E. A B. / Genetic diversity, aggressiveness and metalaxyl sensitivity of Pythium spinosum infecting cucumber in Oman. In: Journal of Phytopathology. 2008 ; Vol. 156, No. 1. pp. 29-35.
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