Changes in microbial communities in coastal sediments along natural CO2 gradients at a volcanic vent in Papua New Guinea

Felix F. Raulf, Katharina Fabricius, Sven Uthicke, Dirk de Beer, Raeid M.M. Abed, Alban Ramette

Research output: Contribution to journalArticle

26 Citations (Scopus)

Abstract

Natural CO2 venting systems can mimic conditions that resemble intermediate to high pCO2 levels as predicted for our future oceans. They represent ideal sites to investigate potential long-term effects of ocean acidification on marine life. To test whether microbes are affected by prolonged exposure to pCO2 levels, we examined the composition and diversity of microbial communities in oxic sandy sediments along a natural CO2 gradient. Increasing pCO2 was accompanied by higher bacterial richness and by a strong increase in rare members in both bacterial and archaeal communities. Microbial communities from sites with CO2 concentrations close to today's conditions had different structures than those of sites with elevated CO2 levels. We also observed increasing sequence abundance of several organic matter degrading types of Flavobacteriaceae and Rhodobacteraceae, which paralleled concurrent shifts in benthic cover and enhanced primary productivity. With increasing pCO2 , sequences related to bacterial nitrifying organisms such as Nitrosococcus and Nitrospirales decreased, and sequences affiliated to the archaeal ammonia-oxidizing Thaumarchaeota Nitrosopumilus maritimus increased. Our study suggests that microbial community structure and diversity, and likely key ecosystem functions, may be altered in coastal sediments by long-term CO2 exposure to levels predicted for the end of the century.

Original languageEnglish
Pages (from-to)3678-3691
Number of pages14
JournalEnvironmental Microbiology
Volume17
Issue number10
DOIs
Publication statusPublished - Oct 1 2015

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Papua New Guinea
coastal sediment
Oceans and Seas
Rhodobacteraceae
microbial communities
microbial community
Flavobacteriaceae
sediments
Nitrosococcus
Ammonia
Ecosystem
venting
ecosystem function
long term effects
primary productivity
community structure
ammonia
oceans
organic matter
microorganisms

ASJC Scopus subject areas

  • Microbiology
  • Ecology, Evolution, Behavior and Systematics

Cite this

Changes in microbial communities in coastal sediments along natural CO2 gradients at a volcanic vent in Papua New Guinea. / Raulf, Felix F.; Fabricius, Katharina; Uthicke, Sven; de Beer, Dirk; Abed, Raeid M.M.; Ramette, Alban.

In: Environmental Microbiology, Vol. 17, No. 10, 01.10.2015, p. 3678-3691.

Research output: Contribution to journalArticle

Raulf, Felix F. ; Fabricius, Katharina ; Uthicke, Sven ; de Beer, Dirk ; Abed, Raeid M.M. ; Ramette, Alban. / Changes in microbial communities in coastal sediments along natural CO2 gradients at a volcanic vent in Papua New Guinea. In: Environmental Microbiology. 2015 ; Vol. 17, No. 10. pp. 3678-3691.
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